HsaALTA0002404-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000125485 | DDX31
Description
DEAD-box helicase 31 [Source:HGNC Symbol;Acc:HGNC:16715]
Coordinates
chr9:132630264-132632091:-
Coord C1 exon
chr9:132632041-132632091
Coord A exon
chr9:132630379-132630403
Coord C2 exon
chr9:132630264-132630378
Length
25 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
ATTTTTGTTACCCTTTTTAGTAC
3' ss Score
7.28
Exon sequences
Seq C1 exon
GATGTTGCAGCTCGGGGCTTAGATCTCCCTCAAGTCACGTGGATTGTTCAG
Seq A exon
TACAACGCTCCATCTTCACCTGCAG
Seq C2 exon
AATACATCCACCGGATTGGAAGAACCGCCCGGATTGGCTGCCATGGGAGCAGCCTGCTCATTTTGGCTCCTTCGGAGGCAGAATATGTCAACTCGTTGGCTTCTCACAAAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125485-34-32,34-31,34-30-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=FE(21.3=100)
A:
NA
C2:
PF0027126=Helicase_C=PD(26.7=42.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGCTTAGATCTCCCTCAA
R:
CGAAGGAGCCAAAATGAGCAG
Band lengths:
113-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains