MmuALTA0005231-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026806 | Ddx31
Description
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Source:MGI Symbol;Acc:MGI:2682639]
Coordinates
chr2:28874131-28875829:+
Coord C1 exon
chr2:28874131-28874181
Coord A exon
chr2:28875690-28875714
Coord C2 exon
chr2:28875715-28875829
Length
25 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
ATTTGCATTGTCCTTTTCAGTAC
3' ss Score
9.15
Exon sequences
Seq C1 exon
GATGTTGCATCTCGAGGCTTGGATCTCCCACAAGTCACCTGGATTGTTCAG
Seq A exon
TACAGTGCTCCGTCTTCACCTGCAG
Seq C2 exon
AGTACATTCACCGCATCGGAAGAACTGCCCGGATTGGCTGTCATGGGAGCAGCCTGCTCATTTTGGCTCCTTCGGAGGCAGAATATGTCAACTCGTTGGCTTCTCACAAAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026806-24-30,24-29,24-28-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=FE(21.6=100)
A:
NA
C2:
PF0027126=Helicase_C=PD(27.0=42.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGCATCTCGAGGCTTGG
R:
CGAAGGAGCCAAAATGAGCAG
Band lengths:
124-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types