HsaALTA0002537-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000187908 | DMBT1
Description
deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:2926]
Coordinates
chr10:124392377-124392857:+
Coord C1 exon
chr10:124392377-124392406
Coord A exon
chr10:124392707-124392709
Coord C2 exon
chr10:124392710-124392857
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CCCACTTTTTGTCCTGACAGCAG
3' ss Score
8.37
Exon sequences
Seq C1 exon
CTCCTTTTCTCAACATCACCCGTCCAAACA
Seq A exon
CAG
Seq C2 exon
ATTATTCCTGCGGAGGCTTCCTATCCCAACCATCAGGGGACTTTTCCAGCCCATTCTATCCCGGGAACTATCCAAACAATGCCAAGTGTGTGTGGGACATTGAGGTGCAAAACAACTACCGTGTGACTGTGATCTTCAGAGATGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187908-64-65,64-64-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(43.0=90.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAACATCACCCGTCCAAAC
R:
AGTTCCCGGGATAGAATGGGC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)