HsaALTA0002537-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000187908 | DMBT1
Description
deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:HGNC:2926]
Coordinates
chr10:122632861-122633341:+
Coord C1 exon
chr10:122632861-122632890
Coord A exon
chr10:122633191-122633193
Coord C2 exon
chr10:122633194-122633341
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CCCACTTTTTGTCCTGACAGCAG
3' ss Score
8.37
Exon sequences
Seq C1 exon
CTCCTTTTCTCAACATCACCCGTCCAAACA
Seq A exon
CAG
Seq C2 exon
ATTATTCCTGCGGAGGCTTCCTATCCCAACCATCAGGGGACTTTTCCAGCCCATTCTATCCCGGGAACTATCCAAACAATGCCAAGTGTGTGTGGGACATTGAGGTGCAAAACAACTACCGTGTGACTGTGATCTTCAGAGATGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187908-63-57,63-56-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(43.0=90.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAACATCACCCGTCCAAAC
R:
AGTTCCCGGGATAGAATGGGC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development