HsaALTA0002553-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225270251-225273491:+
Coord C1 exon
chr1:225270251-225270441
Coord A exon
chr1:225273246-225273378
Coord C2 exon
chr1:225273379-225273491
Length
133 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GAATACTTTGTTCATTTTAGATG
3' ss Score
7.77
Exon sequences
Seq C1 exon
GTTTACCTAAAAGCGATATGGTAACACATCTTAAGCAAGTGGTAACAGAGTTTAAACAAGAGCTGCCTATCATTATAGCTCTGGGAAATCCCTGTCTCAAGCCAAGGCATTGGGAGGCTCTCCAGGAGATTATTGGGAAGTCAGTTCCGCTTGATAAAAACTGTAAAGTAGAGAATCTTCTAGCTCTCAAG
Seq A exon
ATGTTTCAGTATGAAAATGAAATAAATGATATGTCAACCTCAGCAACTAATGAAGCTGCTCTTGAAAAAATGCTATTTAAGATTATTGATTTTTGGAACACTACTCCTTTGCCTTTAATTCTTCACCACACAG
Seq C2 exon
AGATTTACTCTATCTTCATAATTCCATCTATAGATGACATATCAGCTCAGTTAGAAGAGTCTCAAGTCATACTTGCAACAATTAAAGGATCTCCCCACATTGGGCCCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-35-39,35-38-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(15.3=100)
A:
NA
C2:
PF083938=DHC_N2=PD(7.7=13.2),PF083938=DHC_N2=FE(68.5=100)
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGTTTAAACAAGAGCTGCCT
R:
TGGGGAGATCCTTTAATTGTTGCA
Band lengths:
244-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)