MmuALTA1035354-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181628357-181632571:+
Coord C1 exon
chr1:181628357-181628547
Coord A exon
chr1:181632326-181632406
Coord C2 exon
chr1:181632407-181632571
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
AAGTAATCTCTTCACTTCAGCTG
3' ss Score
4.19
Exon sequences
Seq C1 exon
GCTTACCTAAGAACGATATGGTACCCCTGCTCAAACAGTCAGTGTTAGACTTCAGACAAGAGCTGCCAATCATCACAGCCCTGGGAAACGCCTGCCTCAAGGCTCGACACTGGGAGACTCTGCAAGGCATCACTGGAAGGTCAACCTCTCTCAATAAAAACCTCTCCATAGAGAAGCTTCTAGCTCTCAAG
Seq A exon
CTGTTTCCATATGAACGGAAAATAAATGAAATATCAATCTCGGCAACTAACGAAGCTGCTCTTGAAAAAATGCTGTTTAAG
Seq C2 exon
ATCATCGATCTCTGGAACACGACTCCCTTGCACCTGGTCCCTCATCTCACAGAGGGCCGTTCCATCCTCATCATCTCCTCCACTGACGACTTGATAACCCAGCTGGAAGACTCCCAGGCCATCCTTGCATCAATCAAAGGATCGTCCTACCTCAGGCCAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-22-21,22-20-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(15.3=100)
A:
NA
C2:
PF083938=DHC_N2=FE(19.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCACTGGAAGGTCAACC
R:
GGGAGTCTTCCAGCTGGGTTA
Band lengths:
181-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types