HsaALTA0002606-3/3 @ hg19
Alternative 3'ss
Gene
ENSG00000146094 | DOK3
Description
docking protein 3 [Source:HGNC Symbol;Acc:24583]
Coordinates
chr5:176936503-176936830:-
Coord C1 exon
chr5:176936759-176936830
Coord A exon
chr5:176936577-176936658
Coord C2 exon
chr5:176936503-176936576
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CCCCTCCCCCCGGCCTGCAGCTG
3' ss Score
8.9
Exon sequences
Seq C1 exon
ATCAGACGCGCGTGCCCAGCTGAACCAGGTGCGTGAGAAGGCTGCCTTCAGGTGGCCGGGGGCTCCCTCCAG
Seq A exon
CTGTCTCTAGACGGAGGGACGGGAAGTGGCCAGAAGGGGAAGTGTGAGGAGTTCCCGTCCAGCCTGTCATCAGTCTCCCCAG
Seq C2 exon
GTCTTGAAGCGGCGGCCCTGCTCCTGGCCGTGACCATGGACCCTCTGGAGACCCCTATCAAGGATGGCATCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146094-5-11,5-10,5-9-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.100
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCCCAGCTGAACCAG
R:
TGCCATCCTTGATAGGGGTCT
Band lengths:
131-213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)