HsaALTA0002606-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000146094 | DOK3
Description
docking protein 3 [Source:HGNC Symbol;Acc:HGNC:24583]
Coordinates
chr5:177509502-177509829:-
Coord C1 exon
chr5:177509758-177509829
Coord A exon
chr5:177509576-177509657
Coord C2 exon
chr5:177509502-177509575
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CCCCTCCCCCCGGCCTGCAGCTG
3' ss Score
8.9
Exon sequences
Seq C1 exon
ATCAGACGCGCGTGCCCAGCTGAACCAGGTGCGTGAGAAGGCTGCCTTCAGGTGGCCGGGGGCTCCCTCCAG
Seq A exon
CTGTCTCTAGACGGAGGGACGGGAAGTGGCCAGAAGGGGAAGTGTGAGGAGTTCCCGTCCAGCCTGTCATCAGTCTCCCCAG
Seq C2 exon
GTCTTGAAGCGGCGGCCCTGCTCCTGGCCGTGACCATGGACCCTCTGGAGACCCCTATCAAGGATGGCATCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146094-5-11,5-10,5-9,5-8-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.097
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCCCAGCTGAACCAG
R:
TGCCATCCTTGATAGGGGTCT
Band lengths:
131-213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains