HsaINT0051463 @ hg38
Intron Retention
Gene
ENSG00000146094 | DOK3
Description
docking protein 3 [Source:HGNC Symbol;Acc:HGNC:24583]
Coordinates
chr5:177509475-177509857:-
Coord C1 exon
chr5:177509802-177509857
Coord A exon
chr5:177509658-177509801
Coord C2 exon
chr5:177509475-177509657
Length
144 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
CCCCTCCCCCCGGCCTGCAGCTG
3' ss Score
8.9
Exon sequences
Seq C1 exon
AACTCATGACTCGGGGAGCCAGACTGCGATCAGACGCGCGTGCCCAGCTGAACCAG
Seq A exon
GTGCGTGAGAAGGCTGCCTTCAGGTGGCCGGGGGCTCCCTCCAGGTAGGTGTGGGCACCTTGGGCAGCCAGAACCCCAGGGAGGAAATACATGCTGCCCCCAGCCCCTGAGCTGAAGACAGGCTCCCCTCCCCCCGGCCTGCAG
Seq C2 exon
CTGTCTCTAGACGGAGGGACGGGAAGTGGCCAGAAGGGGAAGTGTGAGGAGTTCCCGTCCAGCCTGTCATCAGTCTCCCCAGGTCTTGAAGCGGCGGCCCTGCTCCTGGCCGTGACCATGGACCCTCTGGAGACCCCTATCAAGGATGGCATCCTCTACCAGCAGCATGTCAAGTTTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146094:ENST00000357198:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.117
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCATGACTCGGGGAGCC
R:
GCCAAACTTGACATGCTGCTG
Band lengths:
236-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development