HsaALTA0002784-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000198759 | EGFL6
Description
EGF-like-domain, multiple 6 [Source:HGNC Symbol;Acc:3235]
Coordinates
chrX:13637282-13642044:+
Coord C1 exon
chrX:13637282-13637362
Coord A exon
NA
Coord C2 exon
chrX:13641943-13642044
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
ATGTTCTTTCTTTTTAGCAGATT
3' ss Score
8.01
Exon sequences
Seq C1 exon
TCCCTAAGGTGAATGAAGCAGGTGAATTCGGCCTGATTCTGGTCCAAAGGAAAGCGCTAACTTCCAAACTGGAACATAAAG
Seq A exon
NA
Seq C2 exon
ATTTAAATATCTCGGTTGACTGCAGCTTCAATCATGGGATCTGTGACTGGAAACAGGATAGAGAAGATGATTTTGACTGGAATCCTGCTGATCGAGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198759-9-11,9-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062918=MAM=PU(18.6=77.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTGAATTCGGCCTGATT
R:
TTGAAGCTGCAGTCAACCGAG
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)