HsaALTA0002784-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000198759 | EGFL6
Description
EGF like domain multiple 6 [Source:HGNC Symbol;Acc:HGNC:3235]
Coordinates
chrX:13619163-13623925:+
Coord C1 exon
chrX:13619163-13619243
Coord A exon
NA
Coord C2 exon
chrX:13623824-13623925
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
ATGTTCTTTCTTTTTAGCAGATT
3' ss Score
8.01
Exon sequences
Seq C1 exon
TCCCTAAGGTGAATGAAGCAGGTGAATTCGGCCTGATTCTGGTCCAAAGGAAAGCGCTAACTTCCAAACTGGAACATAAAG
Seq A exon
NA
Seq C2 exon
ATTTAAATATCTCGGTTGACTGCAGCTTCAATCATGGGATCTGTGACTGGAAACAGGATAGAGAAGATGATTTTGACTGGAATCCTGCTGATCGAGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198759-9-12,9-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062918=MAM=PU(18.6=77.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTGAATTCGGCCTGATT
R:
TTGAAGCTGCAGTCAACCGAG
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development