RnoALTA0013339-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000004275 | Egfl6
Description
EGF-like-domain, multiple 6 [Source:RGD Symbol;Acc:1563321]
Coordinates
chrX:29476575-29481517:+
Coord C1 exon
chrX:29476575-29476655
Coord A exon
NA
Coord C2 exon
chrX:29481416-29481517
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TGTTTTGTTTTTTAAAGCAGACT
3' ss Score
5.14
Exon sequences
Seq C1 exon
CCCCTAAGGTAAATGAAGCAGAGGATTTGGATCTGGTCTACATCCAAAGAAAAGAGCTAAATTCCAAACAGGAGCACAAAG
Seq A exon
NA
Seq C2 exon
ACTTAAACATTTCAGTTGACTGCAGCTTTGATCTTGGGGTCTGTGATTGGAAACAGGATAGAGAAGATGATTTTGACTGGAATCCTGCGGATCGAGACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004275-10-11,10-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF0062918=MAM=PU(15.7=78.6)
A:
NA
C2:
PF0062918=MAM=PU(18.6=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAGGATTTGGATCTGGTCT
R:
CCCCAAGATCAAAGCTGCAGT
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]