RnoEX0031147 @ rn6
Exon Skipping
Gene
ENSRNOG00000004275 | Egfl6
Description
EGF-like-domain, multiple 6 [Source:RGD Symbol;Acc:1563321]
Coordinates
chrX:29473163-29481517:+
Coord C1 exon
chrX:29473163-29473483
Coord A exon
chrX:29476575-29476655
Coord C2 exon
chrX:29481413-29481517
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGTTCGAGGTTCTTTATCAGCCC
3' ss Score
1.35
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
TGATTCCTGAACATTCTGTGAAGGAAATACTCACAGCACCTGGGACCATCAAAGACCGAATCAAGAAGTTACTGGCTCACAAGCACACCATGAAGAAAAAGGTGAAGCTTAAAAACGTCACCCCAAGACCCACCAGTACACGAGCCCCTAAGGTCAACTTGCCTTACAGCTCTGAGGAGGGTGTTTCCAGAGGCAGAAACTCTGGTGGGGAACAGAAAAGGAAGGAAGAGAGAAAGAGAAAGAGGCTTGAAGAAGAGAAAAGTGAGAAAGCCCTGAGGAATGAGGTGGAACAGGAGCGACCCCTCCGAGGGGATGTGTTCT
Seq A exon
CCCCTAAGGTAAATGAAGCAGAGGATTTGGATCTGGTCTACATCCAAAGAAAAGAGCTAAATTCCAAACAGGAGCACAAAG
Seq C2 exon
CAGACTTAAACATTTCAGTTGACTGCAGCTTTGATCTTGGGGTCTGTGATTGGAAACAGGATAGAGAAGATGATTTTGACTGGAATCCTGCGGATCGAGACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004275_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.745 A=0.107 C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
PF0062918=MAM=PU(15.7=78.6)
C2:
PF0062918=MAM=PU(18.6=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAACTCTGGTGGGGAAC
R:
CCCCAAGATCAAAGCTGCAGT
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]