MmuEX6046912 @ mm10
Exon Skipping
Gene
ENSMUSG00000000402 | Egfl6
Description
EGF-like-domain, multiple 6 [Source:MGI Symbol;Acc:MGI:1858599]
Coordinates
chrX:166531972-166538734:-
Coord C1 exon
chrX:166538414-166538734
Coord A exon
chrX:166536200-166536280
Coord C2 exon
chrX:166531972-166532073
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGATGGAGGTTCTTTATCAGCCC
3' ss Score
0.13
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
TGATCCCTGAACATTCTGTGAAGGAAATACTCACAGCACCTGGGACCATCAAAGACCGAATCAAGAAGTTACTGGCTCACAAGCGCACCATGAAGAAAAAGGTGAAACTAAAAATGGTCACCCCAAGACCCGCCAGTACACGTGTCCCTAAGGTCAACTTGCCTTACAGCTCTGAGGAGGGTGTTTCCAGGGGCAGAAACTATGATGGAGAACAAAAAAAGAAGGAAGAGGGAAAGAGAGAGAGGCTTGAAGAAGAGAAAGGAGAGAAAACCCTGAGGAACGAGGTGGAACAGGAGCGAACCCTCCGAGGGGATGTATTCT
Seq A exon
CCCCTAAGGTAAATGAAGCAGAGGATTTGGATCTGGTCTACGTCCAAAGAAAAGAGCTAAATTCCAAACTGAAGCACAAAG
Seq C2 exon
ACTTAAACATCTCAGTTGACTGCAGCTTTGATCTTGGGGTCTGTGATTGGAAACAGGATAGAGAAGATGATTTTGACTGGCATCCTGCTGATCGAGACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000402_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.685 A=0.107 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062918=MAM=PU(18.6=77.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTCCAGGGGCAGAAACT
R:
CCCCAAGATCAAAGCTGCAGT
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types