DreEX6038875 @ danRer10
Exon Skipping
Gene
ENSDARG00000045958 | egfl6
Description
EGF-like-domain, multiple 6 [Source:ZFIN;Acc:ZDB-GENE-040718-157]
Coordinates
chr9:54713242-54720942:+
Coord C1 exon
chr9:54713242-54713487
Coord A exon
chr9:54720692-54720766
Coord C2 exon
chr9:54720847-54720942
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTTTCTGTTTGCAGCTC
3' ss Score
10.78
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
CGATTCCCGATTTTCCGTCCAAAACCCGGATTTTGGGTAAATTTGAGAACAGCATCCCAGAGCCTGTGCTGACTGAATCTCCTCGACAGCATCTGCAACCCTTCGATTATGATGGAGAGGTTTACATCGGCGCTCCACAGGAAACACCAGTGTTTCCTGAGGAAGAAGAAGTGGAAGAGGAAGAGGAAGAGGACACAGAGAACCAGCTGGAGGATGAAGAGCTGACCAGCAGAGGAGACGTGTTTT
Seq A exon
CTCAGGATGATTTTGTGTCTTTTTATCAATCAGAGTTAGAGTTGAAGGAGATCCAGGCGGCGCCGCTGAAGGAAA
Seq C2 exon
GATTTCTGACGGATTGTGACTTTGACCGCGGTGCTTGTGAATGGGTTCAGGATAACGCAGATGATCTGGACTGGACCATCAAATATCATCCAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045958-'13-13,'13-11,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.506 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062918=MAM=PU(23.1=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGTTTACATCGGCGCTC
R:
TGAACCCATTCACAAGCACCG
Band lengths:
181-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]