HsaEX6050747 @ hg19
Exon Skipping
Gene
ENSG00000198759 | EGFL6
Description
EGF-like-domain, multiple 6 [Source:HGNC Symbol;Acc:3235]
Coordinates
chrX:13635849-13642044:+
Coord C1 exon
chrX:13635849-13636172
Coord A exon
chrX:13637282-13637362
Coord C2 exon
chrX:13641940-13642044
Length
81 bp
Sequences
Splice sites
3' ss Seq
GACCAAGTGTTCTTTATTAGTCC
3' ss Score
2.87
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTATCCCTGAAAATTCTGTGAAGGAAGTCCTCAGAGCACCTGGTACCATCAAAGACAGAATCAAGAAGTTGCTTGCTCACAAAAACAGCATGAAAAAGAAGGCAAAAATTAAAAATGTTACCCCAGAACCCACCAGGACTCCTACCCCTAAGGTGAACTTGCAGCCCTTCAACTATGAAGAGATAGTTTCCAGAGGCGGGAACTCTCATGGAGGTAAAAAAGGGAATGAAGAGAAAATGAAAGAGGGGCTTGAGGATGAGAAAAGAGAAGAGAAAGCCCTGAAGAATGACATAGAGGAGCGAAGCCTGCGAGGAGATGTGTTTT
Seq A exon
TCCCTAAGGTGAATGAAGCAGGTGAATTCGGCCTGATTCTGGTCCAAAGGAAAGCGCTAACTTCCAAACTGGAACATAAAG
Seq C2 exon
CAGATTTAAATATCTCGGTTGACTGCAGCTTCAATCATGGGATCTGTGACTGGAAACAGGATAGAGAAGATGATTTTGACTGGAATCCTGCTGATCGAGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198759-'8-10,'8-8,9-10=AN
Average complexity
A_C2
Mappability confidence:
89%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062918=MAM=PU(18.6=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTTTCCAGAGGCGGGAACT
R:
TTGAAGCTGCAGTCAACCGAG
Band lengths:
175-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)