GgaEX1021766 @ galGal4
Exon Skipping
Gene
ENSGALG00000016584 | EGFL6
Description
epidermal growth factor-like protein 6 precursor [Source:RefSeq peptide;Acc:NP_001264667]
Coordinates
chr1:122471046-122480438:-
Coord C1 exon
chr1:122480109-122480438
Coord A exon
chr1:122472801-122472881
Coord C2 exon
chr1:122471046-122471132
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGACAAGTTGTTTTCACCAGTTC
3' ss Score
4.6
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
Exon sequences
Seq C1 exon
CTATTCCAGAAAAATCAGTGAAGGAAATTCCAAGAATCCCTGGAACAGCTAAGGACACAATTAAGAAACTCCTTGCACATAAAAACAGCGTGACAAAGCATAAAGCAATCAAGAATGTGATACCAGAAGCAGCCATGACGCCGGCTTCTAAGACCCGCTTGCAGTCACTGGACTATGAAGGCGGTTTTGATCTTGGTGGGAGTTACACTGTGGGAGAGAAAAAAACTGAAGTTACTATAGAAGAGGAAGTCGATGAGACAGATGAGGAAGAGAAGGAAGATTATGAGAATCAGGTTGACCATGAGCAAAGCCTTAGAGGAGATGTCTTCT
Seq A exon
TTCCCCAGGGTAAAGAAGCAGCTGCCTTTGGCCCTCTCCTGGCACAAAGAAAAGTTTCGGTGACAAGACAAGAGCATGAAG
Seq C2 exon
TTGACTGCAGTTTCAGTCGAGGAGTCTGTGACTGGAAACAAGACACTAGTGATGACTTTGACTGGAATCCTGCTGATCGAGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016584-'11-15,'11-14,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=0.000 C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062918=MAM=PU(18.6=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGAGTTACACTGTGGGA
R:
CCAGTCACAGACTCCTCGACT
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]