GgaEX1021766 @ galGal3
Exon Skipping
Gene
ENSGALG00000016584 | EGFL6
Description
NA
Coordinates
chr1:126437807-126446556:-
Coord C1 exon
chr1:126446227-126446556
Coord A exon
chr1:126438919-126438999
Coord C2 exon
chr1:126437807-126437821
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGACAAGTTGTTTTCACCAGTTC
3' ss Score
4.6
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
Exon sequences
Seq C1 exon
CTATTCCAGAAAAATCAGTGAAGGAAATTCCAAGAATCCCTGGAACAGCTAAGGACACAATTAAGAAACTCCTTGCACATAAAAACAGCGTGACAAAGCATAAAGCAATCAAGAATGTGATACCAGAAGCAGCCATGACGCCGGCTTCTAAGACCCGCTTGCAGTCACTGGACTATGAAGGCGGTTTTGATCTTGGTGGGAGTTACACTGTGGGAGAGAAAAAAACTGAAGTTACTATAGAAGAGGAAGTCGATGAGACAGATGAGGAAGAGAAGGAAGATTATGAGAATCAGGTTGACCATGAGCAAAGCCTTAGAGGAGATGTCTTCT
Seq A exon
TTCCCCAGGGTAAAGAAGCAGCTGCCTTTGGCCCTCTCCTGGCACAAAGAAAAGTTTCGGTGACAAGACAAGAGCATGAAG
Seq C2 exon
CACTGTGCTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016584-'10-9,'10-8,12-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]