BtaEX6007970 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017927 | EGFL6
Description
EGF-like-domain, multiple 6 [Source:HGNC Symbol;Acc:HGNC:3235]
Coordinates
chrX:137108579-137112721:-
Coord C1 exon
chrX:137112410-137112721
Coord A exon
chrX:137110355-137110435
Coord C2 exon
chrX:137108579-137108683
Length
81 bp
Sequences
Splice sites
3' ss Seq
GATCAAGTGTTCATTGTTAGCTC
3' ss Score
1.19
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTATCCCCGAGAATTCTGTGAAAGAACTCCTTAGAGCACCTGGTACCATCAAGGACAGAATTAAGAAGTTGCTTGCTCACAAGAATAGCATGAGAAAGAAGGTAAAAATGAAAAACATCACAGAACCCAGAGGGACGCCCACCACAAAGGTTGACTCGGAGCCCTTCAGCTCTGAAGAGAGCATTTCCAGAGATGGGAACCCTCACGGAGAAAAGAATAGGAATGAAAACAGAAAGAAAGAGAGGCTGGAGGATGAGAAAAGAGATGAGAACCATGTGGAGCAGGAACAAAGCCTTCATGGAGATGTGTTTT
Seq A exon
CTCCTAAGGGGAATGAAGCGAGTGAAGTTGATCTGGTTCTGGTCCAAAGAAAAACTACATCATCCCATCTGAAACACAAAG
Seq C2 exon
TAGATTTAAATATCTCAGTTGACTGCACCTTTGACCATGGTGTCTGTGACTGGAAACAGGATATAGAAGATGATTTCGACTGGAATCCTGTGGACCAAGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017927-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=0.214 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062918=MAM=PU(18.6=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCCTCACGGAGAAAAGA
R:
TCCAGTCACAGACACCATGGT
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]