HsaALTA0002786-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000172889 | EGFL7
Description
EGF-like-domain, multiple 7 [Source:HGNC Symbol;Acc:20594]
Coordinates
chr9:139557377-139559237:+
Coord C1 exon
chr9:139557377-139557560
Coord A exon
NA
Coord C2 exon
chr9:139559147-139559237
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
AACTCCTCTCCAACCAGCAGCCC
3' ss Score
2.85
Exon sequences
Seq C1 exon
CTGCACCAAGCTGGCCCTGCACGGCTGCAAGGGAGGCTCCTGTGGACAGGCCAGGCAGGTGGGCCTCAGGAGGTGCCTCCAGGCGGCCAGTGGGCCTGAGGCCCCAGCAAGGGCTAGGGTCCATCTCCAGTCCCAGGACACAGCAGCGGCCACCATGGCCACGCCTGGGCTCCAGCAGCATCAG
Seq A exon
NA
Seq C2 exon
CCCCCAGGACCGGGGAGGCACAGGTGGCCCCCACCACCCGGAGGAGCAGCTCCTGCCCCTGTCCGGGGGATGACTGATTCTCCTCCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172889-2-8,2-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTCCCAGGACACAGC
R:
CTGCTCCTCCGGGTGGTG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)