MmuALTA1016139-3/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026921 | Egfl7
Description
EGF-like domain 7 [Source:MGI Symbol;Acc:MGI:2449923]
Coordinates
chr2:26583864-26585675:+
Coord C1 exon
chr2:26583864-26584048
Coord A exon
chr2:26585585-26585597
Coord C2 exon
chr2:26585598-26585675
Length
13 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
GTTCCACATCTGACCCGCAGCCC
3' ss Score
7.06
Exon sequences
Seq C1 exon
GAGGAGCCTCTGTGCACTGGCAGGCTGCTGTGCAGTCCACGAGGAAGGCTTCGGTCGACAGGACAGGCGTGCAGACTTCAGGAGGGACCCTGGGCAGCAGACATTCCCTGGAAGGGCAGGTTGCATTGCATGGTTGGCTCATGGAGGCAGCAGAGGTGGCCTCAGCCAGGCCTGGGCAGCATCAG
Seq A exon
CCCCCGGCAGCAG
Seq C2 exon
CAAGACGCTGGCTGTTCCACCTGCCCACAAGAACAGCCACCACCAGTACCCAGGGGATGACTAGCGGCCGGACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026921-4-12,4-11,4-10,4-9-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTGCATTGCATGGTTGG
R:
GTTCTTGTGGGCAGGTGGAAC
Band lengths:
103-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types