HsaALTA0003133-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000215187 | FAM166B
Description
family with sequence similarity 166, member B [Source:HGNC Symbol;Acc:34242]
Coordinates
chr9:35563163-35563871:-
Coord C1 exon
chr9:35563764-35563871
Coord A exon
chr9:35563354-35563386
Coord C2 exon
chr9:35563163-35563353
Length
33 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TGGGAGAGTCTGTGCTGCAGGTA
3' ss Score
1.75
Exon sequences
Seq C1 exon
CAGAGCCTTGGCTCAAAGGCAAACAAAAGGAAATGCCCGGCTCCCCATGGCTGTGGCCAGCACCTTCATACCAGGGCTCAACCCTCAGAACCCTCATTATATCCCAGG
Seq A exon
GTACACTGGACACTGCCCACTACTTCGGTTCAG
Seq C2 exon
CGTGGGCCAGACCTATGGGCAGGTGACTGGTCAGCTACTTCGAGGCCCTCCTGGCCTAGCCTGGCCCCCTGTCCACCGCACACTTCTGCCTCCCATTCGGCCTCCAAGATCTCCTGAGGTTCCCAGGGAGAGTCTACCTGTCAGGCGTGGGCAAGAAAGGCTCAGCTCCAGCATGATCCCTGGGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215187-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.474
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.4=28.6)
A:
NA
C2:
PF106294=DUF2475=PD(89.1=75.0),PF106294=DUF2475=PU(12.9=11.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAAAGGAAATGCCCGGCT
R:
TGACCAGTCACCTGCCCATAG
Band lengths:
120-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)