BtaALTA0011248-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000032509 | FAM166B
Description
Bos taurus family with sequence similarity 166, member B (FAM166B), mRNA. [Source:RefSeq mRNA;Acc:NM_001038513]
Coordinates
chr8:60197769-60198469:-
Coord C1 exon
chr8:60198377-60198469
Coord A exon
chr8:60197860-60197992
Coord C2 exon
chr8:60197769-60197859
Length
133 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
GGGTGAGACTTGTGCTGCAGGTA
3' ss Score
2.87
Exon sequences
Seq C1 exon
AAGAGAAACAAAAGGAACTGCCTGGGTCCCCTTGGCTATGGCCAGCACCTTCATACCAGGACTGAACCCCCAGAACCCTCATTATATCCCGGG
Seq A exon
GTACACTGGACACTGCCCACTACTTCGGTTCAGCATGGGCCAGACCTACGGACAGATGACTGGGCAGCTACTTCGCGGCTCTCCTGGCCTCGCCTGGCCCCCTGCCCACCGCACACTTCTGCCTCCCATTCAG
Seq C2 exon
CCTCCAAGATCCCCCGAGCCTCGCAGGAGAAGCCTGCCTGTCAGGCCTGGACACGAAAGGCTCAGCTCCAGCATGGTCCCCGGGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032509-0-2,0-1,0-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.658
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.5=31.6)
A:
NA
C2:
PF106294=DUF2475=PD(88.9=73.7),PF106294=DUF2475=PU(13.4=11.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAAACAAAAGGAACTGCC
R:
GACCATGCTGGAGCTGAGC
Band lengths:
171-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development