BtaALTA0011248-1/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000032509 | FAM166B
Description
Bos taurus family with sequence similarity 166, member B (FAM166B), mRNA. [Source:RefSeq mRNA;Acc:NM_001038513]
Coordinates
chr8:60197769-60198469:-
Coord C1 exon
chr8:60198377-60198469
Coord A exon
NA
Coord C2 exon
chr8:60197769-60197859
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
CACTTCTGCCTCCCATTCAGCCT
3' ss Score
5.92
Exon sequences
Seq C1 exon
AAGAGAAACAAAAGGAACTGCCTGGGTCCCCTTGGCTATGGCCAGCACCTTCATACCAGGACTGAACCCCCAGAACCCTCATTATATCCCGGG
Seq A exon
NA
Seq C2 exon
CCTCCAAGATCCCCCGAGCCTCGCAGGAGAAGCCTGCCTGTCAGGCCTGGACACGAAAGGCTCAGCTCCAGCATGGTCCCCGGGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032509-0-2,0-1,0-0-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.658
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.5=31.6)
A:
NA
C2:
PF106294=DUF2475=PD(88.9=73.7),PF106294=DUF2475=PU(13.4=11.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAAACAAAAGGAACTGCC
R:
GACCATGCTGGAGCTGAGC
Band lengths:
171-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development