HsaALTA0003161-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000213185 | FAM24B
Description
family with sequence similarity 24, member B [Source:HGNC Symbol;Acc:23475]
Coordinates
chr10:124609940-124615302:-
Coord C1 exon
chr10:124615161-124615302
Coord A exon
NA
Coord C2 exon
chr10:124609940-124610036
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
GTCTTTTGACCTCCATACAGTGA
3' ss Score
6.13
Exon sequences
Seq C1 exon
TTGCCTTAGAAGTGGTGAGATGGGAAGCTGCAGTTGGAAGACCCTGGAGGATGCCTGACAAGGGGATGTCTGACACATGATTGGAGCTCTTTTTGAAATGTTTCTTGCCCTTCCTGGAGCAGAGGAGCCATTATTTATGCAG
Seq A exon
NA
Seq C2 exon
TGATTATGCCTGTCATCGCTGGTGGTATCCTGGCGGCCTTGCTCCTGCTGATAGTTGTCGTGCTCTGTCTTTACTTCAAAATACACAACGCGCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213185-2-4,2-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF150691=FAM163=PU(32.3=96.8),PF151931=FAM24=PU(12.3=29.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATGCCTGACAAGGGGAT
R:
AGGATACCACCAGCGATGACA
Band lengths:
127-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)