HsaEX0024391 @ hg19
Exon Skipping
Gene
ENSG00000213185 | FAM24B
Description
family with sequence similarity 24, member B [Source:HGNC Symbol;Acc:23475]
Coordinates
chr10:124608594-124615302:-
Coord C1 exon
chr10:124615161-124615302
Coord A exon
chr10:124609940-124610066
Coord C2 exon
chr10:124608594-124608955
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCTTGCACTTATCTGCCTAGGTA
3' ss Score
7.31
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TTGCCTTAGAAGTGGTGAGATGGGAAGCTGCAGTTGGAAGACCCTGGAGGATGCCTGACAAGGGGATGTCTGACACATGATTGGAGCTCTTTTTGAAATGTTTCTTGCCCTTCCTGGAGCAGAGGAGCCATTATTTATGCAG
Seq A exon
GTACATCGAAGTCTTTTGACCTCCATACAGTGATTATGCCTGTCATCGCTGGTGGTATCCTGGCGGCCTTGCTCCTGCTGATAGTTGTCGTGCTCTGTCTTTACTTCAAAATACACAACGCGCTAAA
Seq C2 exon
AGCTGCAAAGGAACCTGAAGCTGTGGCTGTAAAAAATCACAACCCAGACAAGGTGTGGTGGGCCAAGAACAGCCAGGCCAAAACCATTGCCACGGAGTCTTGTCCTGCCCTGCAGTGCTGTGAAGGATATAGAATGTGTGCCAGTTTTGATTCCCTGCCACCTTGCTGTTGCGACATAAATGAGGGCCTCTGAGTTAGGAAAGGTGGGCACAAAAATCTTCATGAGCAATACTTCTTAGTAGATTGTTTTGTTATTCAAATCAAGTTCTAGTGTTTTTATGTGAGATTATATAATTTACAGTGTTGTTTTATATACTTTTGAATAAATGTACACTATTAAAAATAATCCTCTTTGCTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213185_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF150691=FAM163=PU(32.3=96.8),PF151931=FAM24=PU(12.3=29.0)
C2:
PF150691=FAM163=PD(66.7=95.4),PF151931=FAM24=PD(86.3=96.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATGCCTGACAAGGGGAT
R:
GGCAGGGAATCAAAACTGGCA
Band lengths:
255-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)