RnoEX0072698 @ rn6
Exon Skipping
Gene
ENSRNOG00000026419 | RGD1560958
Description
similar to RIKEN cDNA 1700063I17 [Source:RGD Symbol;Acc:1560958]
Coordinates
chr1:201904973-201915073:-
Coord C1 exon
chr1:201908299-201915073
Coord A exon
chr1:201906165-201906300
Coord C2 exon
chr1:201904973-201905351
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTCTCTACTTCTCTGCCCAGGTA
3' ss Score
8.83
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CTTGAGGACAGAGAAATACGATTAAAGCATGTGTCTTACGTGTGTCAGTTCTTTGGGATCTTTTTATCTTAACCATAAAGGATGATATGACGCCAATGGGTTTATGATTGAGTTCTCTTACATGACCCCATATTTGGGTAGCTAAAATACAAAGTCTAGTCAGTTTTCTATTATTGGCTTTTTAGATAAATGAACATTCTAAGACATTGGCTTTCTCACCTTACGTCTTTTTTTAAAGTCCAATTTTACTTTCGATTAGCAGTCAAATTCTAAGTTTCTCTGGGAGAAATAGAGTCTAAAAAGGGAAATTAGGAGTTACACATATTCAGATATGTTTGGGCAAGTTGTGATGAGGCTTGTTTGAGCATGGAACGGAATTCAGAACTCTGTGAAAGAAAGCTGGTATCTAGAGAGTTGATGTCACACAGCATGTGTCCCAGACTAGGCGAGATGTAAGAGCTAACAATGGCTGTCCATTCCAGCAGGCCGCCCTTCTGAAA
Seq A exon
GTATGTTTAGTTCTTTTGACCTCCGGACGATAATCATGATCGTCATTGGTAGTGGGATCCTGGCAGCCATGTTTCTACTGACAGGAGTTGTGCTCTGTCTTTACTCCAAAATAGCCAGGGCTCTGAATCCATCTGG
Seq C2 exon
AACTGGAAAGGAGTTAGACGATCAACTCTGTTCTGATCCGTGCAAGACCACCCAGGATCAGATCATCCGGGTCAACAGCCTCAATGCTGACACTTGCCGTCCCTTCCACGGCAGCACAATTGGTCTTGAGAACTGCCAGCCCCTCCAGTGTTTCAGTGCATGTGGCACGTATGAAGGCGCTAACTCCCTGACACCTTGCCTTTGTAACACAAAGGAAGGACTCTGACACGACACTGGCGGATAAAAGGAAATCTTCACCATCAGTATTTCAATTTCTTAGTACAATATTTTCTTACTCAAGCCAATTTCTATTGTGTTATAAATGTCGTGTACTATCTAACATGGTATTTATGTACTTTTGTATAAATGTACAATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026419_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF151931=FAM24=PU(13.8=26.7)
C2:
PF151931=FAM24=PD(85.1=97.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCAGACTAGGCGAGATG
R:
AGTTAGCGCCTTCATACGTGC
Band lengths:
253-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]