MmuEX1001062 @ mm10
Exon Skipping
Gene
ENSMUSG00000030858 | 1700007K09Rik
Description
RIKEN cDNA 1700007K09 gene [Source:MGI Symbol;Acc:MGI:1916568]
Coordinates
chr7:131325944-131329299:-
Coord C1 exon
chr7:131329216-131329299
Coord A exon
chr7:131327192-131327327
Coord C2 exon
chr7:131325944-131326324
Length
136 bp
Sequences
Splice sites
3' ss Seq
GTCTGCACTTCTCTGCCCAGGGA
3' ss Score
7.91
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CTCTCATACCCAGAAAGCCTCCTGACATCTCTTTTCTACTCTCATGCCATCTTTTTTTAAATTTTTTATAACCTACTGAGTCCA
Seq A exon
GGATGTATAAGCCTTTTGACCTCCGGACAATAATCACGATCATCATTGGTTGCGGGATCCTGACAGCCATGTTTCTACTGATAGGACTTGTGCTTTGTCTTTACTCCAAAATATCCAAGGCTCTGAAGTCCCCTGG
Seq C2 exon
AATCGCAAAGGAGGCAGATGATGAATGCTATATTGATCCATGCAAGGACCCCCATGAGAGCATCATCCTGGCCAACAGCATCCCTGCTGAGGCTTGTCATTCCTACCAGGCCAACACCATTGCTGTTGCGAGTTGCGGTCCCCTCCAGTGTTGTAATGTATGTGGTGTCTATGCAGATGTTAACTCCCTGCCACCCTGCCTTTGTAGCATAAGGGAAGGACTCTGACATGGCACCTATGGATAAAAGGAAATCTTCATGATCAGTATTTCAATTTCTTACTAGAATATTTTCTTACTCAAGCCAATTTCTATAGTGTTTATGTTGTATACTATCTAACATTGTGTTTATGTACTTTTGTATAAATGTACAATAGTGAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030858-'3-5,'3-3,9-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF151931=FAM24=PU(24.0=26.7)
C2:
PF151931=FAM24=PD(74.0=48.7),PF151931=FAM24=WD(100=55.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCATACCCAGAAAGCCTCCT
R:
ACATTACAACACTGGAGGGGAC
Band lengths:
242-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types