HsaEX0024391 @ hg38
Exon Skipping
Gene
ENSG00000213185 | FAM24B
Description
family with sequence similarity 24 member B [Source:HGNC Symbol;Acc:HGNC:23475]
Coordinates
chr10:122849078-122855786:-
Coord C1 exon
chr10:122855645-122855786
Coord A exon
chr10:122850424-122850550
Coord C2 exon
chr10:122849078-122849439
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCTTGCACTTATCTGCCTAGGTA
3' ss Score
7.31
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TTGCCTTAGAAGTGGTGAGATGGGAAGCTGCAGTTGGAAGACCCTGGAGGATGCCTGACAAGGGGATGTCTGACACATGATTGGAGCTCTTTTTGAAATGTTTCTTGCCCTTCCTGGAGCAGAGGAGCCATTATTTATGCAG
Seq A exon
GTACATCGAAGTCTTTTGACCTCCATACAGTGATTATGCCTGTCATCGCTGGTGGTATCCTGGCGGCCTTGCTCCTGCTGATAGTTGTCGTGCTCTGTCTTTACTTCAAAATACACAACGCGCTAAA
Seq C2 exon
AGCTGCAAAGGAACCTGAAGCTGTGGCTGTAAAAAATCACAACCCAGACAAGGTGTGGTGGGCCAAGAACAGCCAGGCCAAAACCATTGCCACGGAGTCTTGTCCTGCCCTGCAGTGCTGTGAAGGATATAGAATGTGTGCCAGTTTTGATTCCCTGCCACCTTGCTGTTGCGACATAAATGAGGGCCTCTGAGTTAGGAAAGGTGGGCACAAAAATCTTCATGAGCAATACTTCTTAGTAGATTGTTTTGTTATTCAAATCAAGTTCTAGTGTTTTTATGTGAGATTATATAATTTACAGTGTTGTTTTATATACTTTTGAATAAATGTACACTATTAAAAATAATCCTCTTTGCTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213185_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF150691=FAM163=PU(32.3=96.8),PF151931=FAM24=PU(12.3=29.0)
C2:
PF150691=FAM163=PD(66.7=95.4),PF151931=FAM24=PD(86.3=96.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATGCCTGACAAGGGGAT
R:
GGCAGGGAATCAAAACTGGCA
Band lengths:
255-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development