HsaALTA0003210-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000180488 | FAM73A
Description
family with sequence similarity 73, member A [Source:HGNC Symbol;Acc:24741]
Coordinates
chr1:78245309-78248952:+
Coord C1 exon
chr1:78245309-78245421
Coord A exon
NA
Coord C2 exon
chr1:78248928-78248952
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TTTCATTTAATGAAGATTAGAAG
3' ss Score
-4.04
Exon sequences
Seq C1 exon
ACTCCTGACCCCGGAAGGACTCCGCCTTCTCCATGTCAGACTGCTGCTCAGCGCCAGGCATCAGCTGGGAAGCTGGCGTGGGCAGGCCAGCTGTACCTGGCCTGGAGCTCCAG
Seq A exon
NA
Seq C2 exon
AAGAGGAGCCATGTCAGAAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180488-0-3,0-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF102654=DUF2217=PU(17.1=21.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCATGTCAGACTGCTGCT
R:
TCTTCTGACATGGCTCCTCTT
Band lengths:
107-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)