HsaALTA0003210-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000180488 | MIGA1
Description
mitoguardin 1 [Source:HGNC Symbol;Acc:HGNC:24741]
Coordinates
chr1:77779624-77783267:+
Coord C1 exon
chr1:77779624-77779736
Coord A exon
NA
Coord C2 exon
chr1:77783243-77783267
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TTTCATTTAATGAAGATTAGAAG
3' ss Score
-4.04
Exon sequences
Seq C1 exon
ACTCCTGACCCCGGAAGGACTCCGCCTTCTCCATGTCAGACTGCTGCTCAGCGCCAGGCATCAGCTGGGAAGCTGGCGTGGGCAGGCCAGCTGTACCTGGCCTGGAGCTCCAG
Seq A exon
NA
Seq C2 exon
AAGAGGAGCCATGTCAGAAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180488-0-5,0-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF102654=DUF2217=PU(17.1=21.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCATGTCAGACTGCTGCT
R:
TCTTCTGACATGGCTCCTCTT
Band lengths:
107-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development