HsaALTA0003210-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000180488 | MIGA1
Description
mitoguardin 1 [Source:HGNC Symbol;Acc:HGNC:24741]
Coordinates
chr1:77779624-77783267:+
Coord C1 exon
chr1:77779624-77779736
Coord A exon
chr1:77783238-77783242
Coord C2 exon
chr1:77783243-77783267
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TTATGTTTCATTTAATGAAGATT
3' ss Score
3.69
Exon sequences
Seq C1 exon
ACTCCTGACCCCGGAAGGACTCCGCCTTCTCCATGTCAGACTGCTGCTCAGCGCCAGGCATCAGCTGGGAAGCTGGCGTGGGCAGGCCAGCTGTACCTGGCCTGGAGCTCCAG
Seq A exon
ATTAG
Seq C2 exon
AAGAGGAGCCATGTCAGAAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180488-0-5,0-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF102654=DUF2217=PU(17.1=21.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCATGTCAGACTGCTGCT
R:
TCTTCTGACATGGCTCCTCTT
Band lengths:
107-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development