MmuALTA0006957-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000054942 | Fam73a
Description
family with sequence similarity 73, member A [Source:MGI Symbol;Acc:MGI:1924567]
Coordinates
chr3:152000690-152003371:-
Coord C1 exon
chr3:152003216-152003371
Coord A exon
NA
Coord C2 exon
chr3:152000690-152000804
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
TCCTGTTTCATTGATTTAAGATT
3' ss Score
5.89
Exon sequences
Seq C1 exon
GAAGAACTCCGCCTCCCGCAGCCAGAGGCTGCTAGGTGCGGGCTGCGGCTGGGAGACCGAGGAGGCTCAGGTGCTGGCGGGCGCGGGGCAGAGCGGGCGACGGGCCGGGGACCACACCGCTCGGAGCGCGGGGCCCGCAGAGCGGAGAGAACGGCG
Seq A exon
NA
Seq C2 exon
ATTGGACAGAGGCGACATGTCAGACGAGACAGTCAGCAGATCACAGTTCTCCTTGAAGACGTACGCAGTTAGAGTGTTTGCTCTCCCTGTGTCTTGGTATTATTCTCTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054942-1-1,1-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102654=DUF2217=PU(2.5=21.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACTCCGCCTCCCGC
R:
GGGAGAGAGAATAATACCAAGACACA
Band lengths:
268-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: