MmuALTA0006957-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000054942 | Miga1
Description
mitoguardin 1 [Source:MGI Symbol;Acc:MGI:1924567]
Coordinates
chr3:152337726-152340407:-
Coord C1 exon
chr3:152340252-152340407
Coord A exon
NA
Coord C2 exon
chr3:152337726-152338040
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
TTTTTTTTCTTTCCAGACAGGGT
3' ss Score
6.69
Exon sequences
Seq C1 exon
GAAGAACTCCGCCTCCCGCAGCCAGAGGCTGCTAGGTGCGGGCTGCGGCTGGGAGACCGAGGAGGCTCAGGTGCTGGCGGGCGCGGGGCAGAGCGGGCGACGGGCCGGGGACCACACCGCTCGGAGCGCGGGGCCCGCAGAGCGGAGAGAACGGCG
Seq A exon
NA
Seq C2 exon
GGTCTCAGTATGTATCTCTGTCTGGCCTGGAACTCCCCGTGTAGACCACACTGACCTCAAACTCACGGAGATCTGCCTCCCAAAAACTGGAAGCAAAGGCATACAGCACCATACTCAGCAAGACTTCAACTTTGCATCTTTCATGGATAAAGCACCCAGAAATCCCTGTGGCTGATTAATTCCTGTTTCATTGATTTAAGATTGGACAGAGGCGACATGTCAGACGAGACAGTCAGCAGATCACAGTTCTCCTTGAAGACGTACGCAGTTAGAGTGTTTGCTCTCCCTGTGTCTTGGTATTATTCTCTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054942-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102654=DUF2217=PU(2.5=21.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCGGAGAGAACGGC
R:
GGAGGCAGATCTCCGTGAGTT
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types