HsaALTA0003292-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000171931 | FBXW10
Description
F-box and WD repeat domain containing 10 [Source:HGNC Symbol;Acc:1211]
Coordinates
chr17:18678449-18681891:+
Coord C1 exon
chr17:18678449-18678505
Coord A exon
NA
Coord C2 exon
chr17:18681791-18681891
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TCTTTTTTTTGAAAAAGCAGATG
3' ss Score
2
Exon sequences
Seq C1 exon
CAGTGTTAATAGAGGAACTTCAAAGTCAAGGAAAGTCAAAATCACCCCGAAGAGATG
Seq A exon
NA
Seq C2 exon
ATGATGTGGAGAAAGCACAAAAACAAGGACAATTGGAAACTCCTGGAAAACTGCCCAGTCACCCAAAGAAAAAGTCTTGGAAAATCCCTATGTCACCTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171931-13-15,13-14-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.274
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAGTCAAAATCACCCCGA
R:
TTGGGTGACTGGGCAGTTTTC
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)