HsaALTA0003292-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000171931 | FBXW10
Description
F-box and WD repeat domain containing 10 [Source:HGNC Symbol;Acc:HGNC:1211]
Coordinates
chr17:18775364-18778578:+
Coord C1 exon
chr17:18775364-18775492
Coord A exon
NA
Coord C2 exon
chr17:18778478-18778578
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
3' ss Seq
TCTTTTTTTTGAAAAAGCAGATG
3' ss Score
2
Exon sequences
Seq C1 exon
CAGGCCACTACCTTTGCTTGTCTTTGAGAAACTGGAATGAATACAATGCCTGGCTTCTCCCAAGAGTGACTGGTTTTCCTTAATTGTCCCTTTTCTGACTTGAGGCCACAGAGGGAGAACCTTTCTAAG
Seq A exon
NA
Seq C2 exon
ATGATGTGGAGAAAGCACAAAAACAAGGACAATTGGAAACTCCTGGAAAACTGCCCAGTCACCCAAAGAAAAAGTCTTGGAAAATCCCTATGTCACCTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171931-20-18,20-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.272
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACTTGAGGCCACAGAGG
R:
TTGGGTGACTGGGCAGTTTTC
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development