HsaALTA0003462-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000136877 | FPGS
Description
folylpolyglutamate synthase [Source:HGNC Symbol;Acc:HGNC:3824]
Coordinates
chr9:127804636-127807087:+
Coord C1 exon
chr9:127804636-127804700
Coord A exon
NA
Coord C2 exon
chr9:127806992-127807087
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTG
5' ss Score
5.9
3' ss Seq
GCTCTCCCCACCTGGTGCAGGTT
3' ss Score
6.8
Exon sequences
Seq C1 exon
GGCTCCACCTGTGCCTTCACGGAATGTATCCTCCGAAGCTATGGCCTGAAGACGGGATTCTTTAG
Seq A exon
NA
Seq C2 exon
GTTCGGGAGCGGATCCGCATCAATGGGCAGCCCATCAGTCCTGAGCTCTTCACCAAGTACTTCTGGCGCCTCTACCACCGGCTGGAGGAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136877-7-24,7-23,7-22-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(11.7=100)
A:
NA
C2:
PF082457=Mur_ligase_M=FE(17.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAAGCTATGGCCTGAAGA
R:
GCGCCAGAAGTACTTGGTGAA
Band lengths:
103-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains