MmuALTA0007389-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000009566 | Fpgs
Description
folylpolyglutamyl synthetase [Source:MGI Symbol;Acc:MGI:95576]
Coordinates
chr2:32687920-32691254:-
Coord C1 exon
chr2:32691190-32691254
Coord A exon
NA
Coord C2 exon
chr2:32687920-32688015
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTG
5' ss Score
5.9
3' ss Seq
GCTCTCCTCACATGGTGCAGGTG
3' ss Score
6.33
Exon sequences
Seq C1 exon
GGCTCCACCTGTGCCTTCACCGAACGGATCCTGCGGAATTACGGCCTGAAGACCGGCTTCTTTAG
Seq A exon
NA
Seq C2 exon
GTGCGGGAGCGGATTCGAATCAACGGGAAACCAATCAGCCCCGAGCTCTTCACCAAGCACTTCTGGTGCCTCTATAACCAGCTGGAGGAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009566-13-19,13-18,13-17-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(14.3=100)
A:
NA
C2:
PF082457=Mur_ligase_M=FE(17.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGATCCTGCGGAATTACG
R:
AAGTGCTTGGTGAAGAGCTCG
Band lengths:
105-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types