HsaALTA0003690-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000089639 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
chr19:19636707-19637029:-
Coord C1 exon
chr19:19636917-19637029
Coord A exon
chr19:19636788-19636796
Coord C2 exon
chr19:19636707-19636787
Length
9 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TATTGACCTGTGCCACCTAGGGA
3' ss Score
4.39
Exon sequences
Seq C1 exon
CTCCCCTCTGGACATCAGAAAGAAGCTCTCTGGGCCTCTTCCTCCAAGGCTGGATGAGAATTCAGCTGAGCCAGGCCCTTGGGAGGATCCGGGCACAGGCTGGCGCTGGCAAG
Seq A exon
GGACTCCAG
Seq C2 exon
GCCCCACTCCGGGCAGCGATGTGGACAGCGTGGGTGGCGGCAGCGAGTCTCGGTCCCTGGACTCACCCACTTCCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089639-23-26,23-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATTCAGCTGAGCCAGGC
R:
CACCCACGCTGTCCACATC
Band lengths:
94-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development