RnoALTA0016697-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000027257 | Gmip
Description
Gem-interacting protein [Source:RGD Symbol;Acc:1565577]
Coordinates
chr16:21355877-21356132:-
Coord C1 exon
chr16:21356026-21356132
Coord A exon
chr16:21355946-21355954
Coord C2 exon
chr16:21355877-21355945
Length
9 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
ATTGCCCTGTCCTTACACAGGGA
3' ss Score
9.26
Exon sequences
Seq C1 exon
TTTCCCTCAGGACACAAAAAAGAAGTTTTCAGGGCCTCTACCTACAAGGCTGGAGGAGGGTCCCTCTGAGCCTGGCCCTTGGGAGGTTGCCAGCTTAGGCAGCCAGG
Seq A exon
GGATCCCAG
Seq C2 exon
GCAGTGATGTGGACAGCGTAGGTGGTGGCAGTGAGTCCCGGTCCTTGGATTCTCCCACTTCCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027257-18-19,18-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTACCTACAAGGCTGGA
R:
CACCTACGCTGTCCACATCAC
Band lengths:
98-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]