HsaALTA0003787-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000213654 | GPSM3
Description
G-protein signaling modulator 3 [Source:HGNC Symbol;Acc:13945]
Coordinates
chr6:32159486-32160049:-
Coord C1 exon
chr6:32159925-32160049
Coord A exon
chr6:32159648-32159685
Coord C2 exon
chr6:32159486-32159647
Length
38 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
CTCCACACCCCTCTCCCCAGCCC
3' ss Score
5.88
Exon sequences
Seq C1 exon
AATGGACATATTTTGGCATCAGGGCCCCCCTCAGGATGAGGAAGGCTGGCCCCCTCCAAACTCCACCACTCGGCCTTGGCGATCTGCTCCTCCATCCCCTCCTCCTCCAGGGACCCGCCACACAG
Seq A exon
CCCTGGGACCCCGCTCGGCCTCCCTGCTCTCCCTGCAG
Seq C2 exon
ACTGAACTCCTTCTGGACCTGGTGGCTGAAGCCCAGTCCCGCCGCCTGGAGGAGCAGAGGGCCACCTTCTACACCCCCCAAAACCCCTCAAGCCTAGCCCCTGCCCCACTCCGTCCTCTCGAGGACAGAGAACAGCTTTACAGCACTATCCTCAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213654-6-13,6-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.980
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGCTCCTCCATCCCCTC
R:
TAGAAGGTGGCCCTCTGCTC
Band lengths:
116-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)