HsaEX0028478 @ hg19
Exon Skipping
Gene
ENSG00000213654 | GPSM3
Description
G-protein signaling modulator 3 [Source:HGNC Symbol;Acc:13945]
Coordinates
chr6:32159486-32160683:-
Coord C1 exon
chr6:32160249-32160683
Coord A exon
chr6:32159925-32160027
Coord C2 exon
chr6:32159486-32159685
Length
103 bp
Sequences
Splice sites
3' ss Seq
TGGACATATTTTGGCATCAGGGC
3' ss Score
4.04
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GAAAGAGCAGAAGAGGAGGTGGGGTGGAGGGAGCAGAGCCAGGGATTAGGGGACTACTGAGGCTCTGGAGATGAGACCGCCAGGAGTCCTTCCCCACCATGAGCCCCCTCCACTCCTGCAGCTGGAGGAGTTTTTCCCAGTCTCAGTGCTGCCCTGGGGCGAGAGAGACTGAACAAGCTGTTTGGGTGGGAAGAGAATGGAGGAAGTTGACAGGGATGGGCGGGGCCCGTGGGGGGGCTGACCAGGAACCCAGCTTCCTGCTCAGTACCCAGGCATCCAGCCCCCAGCTCACCCCCACCCCTTCCAGCCCCCACTCCCCTCAGGAACCCAAGGTTCCAGCCCTCCTCCCAAATCCCAGCCACCCCTCCCCCACCAGTTTCTCCCCTCTAGGGGATGGAGGCTGAGAGACCCCAGGAAGAAGAGGATGGTGAGCAG
Seq A exon
GGCCCCCCTCAGGATGAGGAAGGCTGGCCCCCTCCAAACTCCACCACTCGGCCTTGGCGATCTGCTCCTCCATCCCCTCCTCCTCCAGGGACCCGCCACACAG
Seq C2 exon
CCCTGGGACCCCGCTCGGCCTCCCTGCTCTCCCTGCAGACTGAACTCCTTCTGGACCTGGTGGCTGAAGCCCAGTCCCGCCGCCTGGAGGAGCAGAGGGCCACCTTCTACACCCCCCAAAACCCCTCAAGCCTAGCCCCTGCCCCACTCCGTCCTCTCGAGGACAGAGAACAGCTTTACAGCACTATCCTCAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213654_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.983
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218812=GoLoco=WD(100=34.3),PF0218812=GoLoco=PU(47.8=16.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCAGTTTCTCCCCTCTA
R:
AGCTGTTCTCTGTCCTCGAGA
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)