RnoEX0039709 @ rn6
Exon Skipping
Gene
ENSRNOG00000000441 | Gpsm3
Description
G-protein signaling modulator 3 [Source:RGD Symbol;Acc:1303014]
Coordinates
chr20:4355175-4356298:+
Coord C1 exon
chr20:4355175-4355591
Coord A exon
chr20:4355822-4355912
Coord C2 exon
chr20:4356099-4356298
Length
91 bp
Sequences
Splice sites
3' ss Seq
ATCTATAGAGTCTCCCTCAGGAT
3' ss Score
-0.58
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGAGGTGGGGACAGAGGAGCAGTGGGGCAGGCTAAGGGGTTACTGAGGCTCTGGAGATGAGACGGCAGGAATCCGCCCGTCAGGAGCACACTCCACTCCTGCAGCTGGAATTTCTCCCAGTCTCTGTCCTCCCCTGGGGCAAGAGAGGTCAAGCGAGCTGTTTGGGTGGGAAAAAGCGAGGATGGAGGAAGTTGACAGAGATGGGCGGGGCCCGTGGGGGGGCTGACCAACAACCCAGCTTCCTGCTCAGTACCTAGGCATCCAGCCCCCAGCTCACCCCCACCCCTTCCAGACCCCATTCCCCTCAGGAACCCAAGGTTCCAGTCCTCCTCCCAAATTCCAGCCACCCCTCCCCATCAGTGTCTCTCCCCAAGTCCAGGGATGGAGGCTGAAAGACCCCAGGAAGATGGTGAGCAG
Seq A exon
GATGATCAGGGCTGGCCCCCTGTGAACTCCACCGCTCGGCCTTGGAGATCTGCACCTCCCTCCCCTCCTCCTCCTGGAACCCGACACACAG
Seq C2 exon
CCCTGGGGCCCCGTTCTGGCTCCCTGCTCTCCCTGCAGACTGAGCTCCTTCTGGACCTGGTGGCTGAAGCCCAGTCACGCCGTCTAGAGGAACAGAGGGCCGCCTTCCACACCCCCAAGGTTCCCCCAAGCCTAGCCCCAACCCCACCCCGGCTTCTTGAAGACAAAGAACAGCTCTACAGCACCATACTCAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000441-'2-2,'2-1,3-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.866
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218812=GoLoco=WD(100=34.3),PF0218812=GoLoco=PU(47.8=16.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCCCATCAGTGTCTCTC
R:
CTCTGTTCCTCTAGACGGCGT
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]