HsaEX0028478 @ hg38
Exon Skipping
Gene
ENSG00000213654 | GPSM3
Description
G-protein signaling modulator 3 [Source:HGNC Symbol;Acc:HGNC:13945]
Coordinates
chr6:32191709-32192868:-
Coord C1 exon
chr6:32192472-32192868
Coord A exon
chr6:32192148-32192238
Coord C2 exon
chr6:32191709-32191908
Length
91 bp
Sequences
Splice sites
3' ss Seq
GGCATCAGGGCCCCCCTCAGGAT
3' ss Score
0.06
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
CCAGGGATTAGGGGACTACTGAGGCTCTGGAGATGAGACCGCCAGGAGTCCTTCCCCACCATGAGCCCCCTCCACTCCTGCAGCTGGAGGAGTTTTTCCCAGTCTCAGTGCTGCCCTGGGGCGAGAGAGACTGAACAAGCTGTTTGGGTGGGAAGAGAATGGAGGAAGTTGACAGGGATGGGCGGGGCCCGTGGGGGGGCTGACCAGGAACCCAGCTTCCTGCTCAGTACCCAGGCATCCAGCCCCCAGCTCACCCCCACCCCTTCCAGCCCCCACTCCCCTCAGGAACCCAAGGTTCCAGCCCTCCTCCCAAATCCCAGCCACCCCTCCCCCACCAGTTTCTCCCCTCTAGGGGATGGAGGCTGAGAGACCCCAGGAAGAAGAGGATGGTGAGCAG
Seq A exon
GATGAGGAAGGCTGGCCCCCTCCAAACTCCACCACTCGGCCTTGGCGATCTGCTCCTCCATCCCCTCCTCCTCCAGGGACCCGCCACACAG
Seq C2 exon
CCCTGGGACCCCGCTCGGCCTCCCTGCTCTCCCTGCAGACTGAACTCCTTCTGGACCTGGTGGCTGAAGCCCAGTCCCGCCGCCTGGAGGAGCAGAGGGCCACCTTCTACACCCCCCAAAACCCCTCAAGCCTAGCCCCTGCCCCACTCCGTCCTCTCGAGGACAGAGAACAGCTTTACAGCACTATCCTCAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213654-'8-15,'8-14,9-15
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=0.907 C2=0.853
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218812=GoLoco=WD(100=34.3),PF0218812=GoLoco=PU(47.8=16.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGAGACCCCAGGAAGAA
R:
GCTAGGCTTGAGGGGTTTTGG
Band lengths:
172-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development