HsaINT1014800 @ hg38
Intron Retention
Gene
ENSG00000213654 | GPSM3
Description
G-protein signaling modulator 3 [Source:HGNC Symbol;Acc:HGNC:13945]
Coordinates
chr6:32191709-32192250:-
Coord C1 exon
chr6:32192148-32192250
Coord A exon
chr6:32191909-32192147
Coord C2 exon
chr6:32191709-32191908
Length
239 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
CTCCACACCCCTCTCCCCAGCCC
3' ss Score
5.88
Exon sequences
Seq C1 exon
GGCCCCCCTCAGGATGAGGAAGGCTGGCCCCCTCCAAACTCCACCACTCGGCCTTGGCGATCTGCTCCTCCATCCCCTCCTCCTCCAGGGACCCGCCACACAG
Seq A exon
GTACCCCTACCCACCCAGGGAGAGCCCCGACCCTAGTGCCCACATCCTGACCCCATTACCAAGGCCCACTCCATTGTGGGCCCTCTCCCCACCTCCTCCAGACTCCCCTTGGGATTCCCCATTGCACCCCCTCTCCTCTGATCCAAAGTCCCTAATCACGTCACCCTGTCCACACTCCCCCACGGCTCCTGTCTGCCAACCTCTCTGGGTCTCTGAGCCCTCCACACCCCTCTCCCCAG
Seq C2 exon
CCCTGGGACCCCGCTCGGCCTCCCTGCTCTCCCTGCAGACTGAACTCCTTCTGGACCTGGTGGCTGAAGCCCAGTCCCGCCGCCTGGAGGAGCAGAGGGCCACCTTCTACACCCCCCAAAACCCCTCAAGCCTAGCCCCTGCCCCACTCCGTCCTCTCGAGGACAGAGAACAGCTTTACAGCACTATCCTCAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213654:ENST00000375040:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.894 A=NA C2=0.853
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0218812=GoLoco=WD(100=34.3),PF0218812=GoLoco=PU(47.8=16.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGATGAGGAAGGCTGGC
R:
TGGTGACTGAGGATAGTGCTGT
Band lengths:
295-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains