RnoINT0067143 @ rn6
Intron Retention
Gene
ENSRNOG00000000441 | Gpsm3
Description
G-protein signaling modulator 3 [Source:RGD Symbol;Acc:1303014]
Coordinates
chr20:4355810-4356298:+
Coord C1 exon
chr20:4355810-4355912
Coord A exon
chr20:4355913-4356098
Coord C2 exon
chr20:4356099-4356298
Length
186 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
TCCTCCCTCCTCTCCCATAGCCC
3' ss Score
10.18
Exon sequences
Seq C1 exon
AGTCTCCCTCAGGATGATCAGGGCTGGCCCCCTGTGAACTCCACCGCTCGGCCTTGGAGATCTGCACCTCCCTCCCCTCCTCCTCCTGGAACCCGACACACAG
Seq A exon
GTACCCCCCCTACCCTGTAAGATCTTGACCCCCCATTTCCCAGACTACCCCAGTGTAGGTCCACTAACCATAACACCTGCTGGCTTGCTGGTCCCTACCTAACCCAGTTACCAGCTCACCTGTCCTCTTGCTACTCCATTCTGCCACAGCCTCCGAGTCTGAACCCTCCTCCCTCCTCTCCCATAG
Seq C2 exon
CCCTGGGGCCCCGTTCTGGCTCCCTGCTCTCCCTGCAGACTGAGCTCCTTCTGGACCTGGTGGCTGAAGCCCAGTCACGCCGTCTAGAGGAACAGAGGGCCGCCTTCCACACCCCCAAGGTTCCCCCAAGCCTAGCCCCAACCCCACCCCGGCTTCTTGAAGACAAAGAACAGCTCTACAGCACCATACTCAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000441:ENSRNOT00000000510:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.866
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0218812=GoLoco=WD(100=34.3),PF0218812=GoLoco=PU(47.8=16.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGATCTGCACCTCCCTC
R:
TGGTGACTGAGTATGGTGCTG
Band lengths:
249-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]