HsaINT0071950 @ hg19
Intron Retention
Gene
ENSG00000234508 | GPSM3
Description
G-protein signaling modulator 3 [Source:HGNC Symbol;Acc:13945]
Coordinates
chr6:32159486-32160027:-
Coord C1 exon
chr6:32159925-32160027
Coord A exon
chr6:32159686-32159924
Coord C2 exon
chr6:32159486-32159685
Length
239 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
CTCCACACCCCTCTCCCCAGCCC
3' ss Score
5.88
Exon sequences
Seq C1 exon
GGCCCCCCTCAGGATGAGGAAGGCTGGCCCCCTCCAAACTCCACCACTCGGCCTTGGCGATCTGCTCCTCCATCCCCTCCTCCTCCAGGGACCCGCCACACAG
Seq A exon
GTACCCCTACCCACCCAGGGAGAGCCCCGACCCTAGTGCCCACATCCTGACCCCATTACCAAGGCCCACTCCATTGTGGGCCCTCTCCCCACCTCCTCCAGACTCCCCTTGGGATTCCCCATTGCACCCCCTCTCCTCTGATCCAAAGTCCCTAATCACGTCACCCTGTCCACACTCCCCCACGGCTCCTGTCTGCCAACCTCTCTGGGTCTCTGAGCCCTCCACACCCCTCTCCCCAG
Seq C2 exon
CCCTGGGACCCCGCTCGGCCTCCCTGCTCTCCCTGCAGACTGAACTCCTTCTGGACCTGGTGGCTGAAGCCCAGTCCCGCCGCCTGGAGGAGCAGAGGGCCACCTTCTACACCCCCCAAAACCCCTCAAGCCTAGCCCCTGCCCCACTCCGTCCTCTCGAGGACAGAGAACAGCTTTACAGCACTATCCTCAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000234508-GPSM3:NM_022107:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGATGAGGAAGGCTGGC
R:
TGGTGACTGAGGATAGTGCTGT
Band lengths:
295-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)