MmuINT0073460 @ mm9
Intron Retention
Gene
ENSMUSG00000034786 | Gpsm3
Description
G-protein signalling modulator 3 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:2146785]
Coordinates
chr17:34727406-34727886:+
Coord C1 exon
chr17:34727406-34727508
Coord A exon
chr17:34727509-34727686
Coord C2 exon
chr17:34727687-34727886
Length
178 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
TCCTCCTTCCTCTCCCATAGCCC
3' ss Score
10.86
Exon sequences
Seq C1 exon
AGTCTCCCGCAGGATGATCAGGGATGGCCCCCTGTGAATGCCACCGCTCGGCCTTGGAGATCTGCTCCTCCCTCCCCTCCTCCTCCTGGAACCCGACACACAG
Seq A exon
GTACCCCACCAACCCTGGAAGATCTTGACCCTATCACCCAGGCTACCCCAGTGTAGGTCCACTAACCATCACACCTGTTGGTCCCTAGCTCGTCCACCAGCTCACCTGTCCCCACCGCTTGCTACTCCCATTCTGCCATAGCCTCTGGGTCTGAATCCTCCTCCTTCCTCTCCCATAG
Seq C2 exon
CCCTAGGGCCCCGTTCTGGCTCCCTGCTCTCCCTGCAGACTGAGCTCCTTCTGGACCTAGTGGCCGAAGCCCAGTCCCGCCGCCTAGAGGAACAGAGGGCCACCTTCCACACCCCCGAGGCCCCACCAAACCTAGCCCCAGCCCCACCCCGGCTTCTTGAAGACAAAGAACAGCTCTACAGCACCATCCTTAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034786-Gpsm3:NM_134116:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.914
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0218812=GoLoco=WD(100=34.3),PF0218812=GoLoco=PU(47.8=16.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGCCTTGGAGATCTGCTC
R:
AGGATGGTGCTGTAGAGCTGT
Band lengths:
247-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: