MmuEX0021767 @ mm10
Exon Skipping
Gene
ENSMUSG00000034786 | Gpsm3
Description
G-protein signalling modulator 3 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:2146785]
Coordinates
chr17:34589806-34590941:+
Coord C1 exon
chr17:34589806-34590260
Coord A exon
chr17:34590473-34590563
Coord C2 exon
chr17:34590742-34590941
Length
91 bp
Sequences
Splice sites
3' ss Seq
GGTATCAGAGTCTCCCGCAGGAT
3' ss Score
-0.69
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
AGCTAGTTCCGGTGTTGACAGAGAAGAGCTGGAGGGGAGGTGGGGATGGTGGAGCAGTGTGGCCGGCTAGGGGGTTACTGAGGCTCTGGAGATGAGCCGGCAGGAATCCGCCCTGTCAGGAGCTTGCTCCACTCCTGCAGCTGGAGTCTCTCCCAGTCTCTGTCCTCCCCTGGGGCAAGAGAGGTCAAACAAGCTGTTTGGGTGGGAAAAAGAGGATGGAGGAAGTTGACAGAGTTGGGCGGGGCCCATGGGGGGGCTGACCAGGAACCCGGCTTCCTGCTCAGTACCCTGGCATCCAGCCCCCAGCTCACCCCCACCCCGTCCAGCCCCCATTCCCCTCAGGAACCCAAGGTTCCGGGTCCTCCTCCCAAATTCCAGCTACTCTTCCCCATCAGTGTCTCTCCCCAAGTCCAGGGATGGAGGCTGAAAGACCCCAGGAAGAAGATGGTGAACAG
Seq A exon
GATGATCAGGGATGGCCCCCTGTGAATGCCACCGCTCGGCCTTGGAGATCTGCTCCTCCCTCCCCTCCTCCTCCTGGAACCCGACACACAG
Seq C2 exon
CCCTAGGGCCCCGTTCTGGCTCCCTGCTCTCCCTGCAGACTGAGCTCCTTCTGGACCTAGTGGCCGAAGCCCAGTCCCGCCGCCTAGAGGAACAGAGGGCCACCTTCCACACCCCCGAGGCCCCACCAAACCTAGCCCCAGCCCCACCCCGGCTTCTTGAAGACAAAGAACAGCTCTACAGCACCATCCTTAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034786-'0-4,'0-3,1-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.911
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218812=GoLoco=WD(100=34.3),PF0218812=GoLoco=PU(47.8=16.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCCATCAGTGTCTCTCCC
R:
GTGGCCCTCTGTTCCTCTAGG
Band lengths:
174-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types