HsaALTA0003982-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000019991 | HGF
Description
hepatocyte growth factor (hepapoietin A; scatter factor) [Source:HGNC Symbol;Acc:4893]
Coordinates
chr7:81399200-81399714:-
Coord C1 exon
chr7:81399607-81399714
Coord A exon
chr7:81399330-81399344
Coord C2 exon
chr7:81399200-81399329
Length
15 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TAGGCACTGACTCCGAACAGGAT
3' ss Score
3.68
Exon sequences
Seq C1 exon
ATTGGGCTCAGCCTTGCTCCTCCCTTCCTTACTCGGATAGGAGCCACTGGGATCTGGAGCTCCAGCTTCCAAATTGAAGCTGGCCTCAGGCCAGGTGACCTTTTCTTT
Seq A exon
GATTCTTTCACCCAG
Seq C2 exon
GCATCTCCTCCAGAGGGATCCGCCAGCCCGTCCAGCAGCACCATGTGGGTGACCAAACTCCTGCCAGCCCTGCTGCTGCAGCATGTCCTCCTGCATCTCCTCCTGCTCCCCATCGCCATCCCCTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019991-0-7,0-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAATTGAAGCTGGCCTCA
R:
GGAGTTTGGTCACCCACATGG
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)